scrapemed

• scrapemed package
  • Submodules
  • scrapemed.paper module
    • ScrapeMed’s Paper Module
    • Paper
      • Paper.abstract_as_str()
      • Paper.body_as_str()
      • Paper.expanded_query()
      • Paper.from_pmc()
      • Paper.from_xml()
      • Paper.full_text()
      • Paper.info()
      • Paper.print_abstract()
      • Paper.print_body()
      • Paper.query()
      • Paper.to_relational()
      • Paper.vectorize()
    • emptyTextWarning
    • pubmedHTTPError
  • scrapemed.paperSet module
    • ScrapeMed’s PaperSet Module
    • paperSet
      • paperSet.add_paper()
      • paperSet.add_papers()
      • paperSet.add_pmcid()
      • paperSet.add_pmcids()
      • paperSet.from_pmcid_list()
      • paperSet.from_search()
      • paperSet.to_df()
      • paperSet.visualize()
      • paperSet.visualize_title_wordcloud()
      • paperSet.visualize_unique_values()
  • scrapemed._parse module
    • ScrapeMed’s _parse Module
    • badTextFormattingWarning
    • define_data_dict()
    • gather_abstract()
    • gather_acknowledgements()
    • gather_article_categories()
    • gather_article_id()
    • gather_article_types()
    • gather_authors()
    • gather_body()
    • gather_custom_metadata()
    • gather_footnote()
    • gather_fpage()
    • gather_funding()
    • gather_issn()
    • gather_issue()
    • gather_journal_id()
    • gather_journal_title()
    • gather_lpage()
    • gather_non_author_contributors()
    • gather_notes()
    • gather_permissions()
    • gather_published_date()
    • gather_publisher_location()
    • gather_publisher_name()
    • gather_title()
    • gather_volume()
    • generate_paper_dict()
    • paper_dict_from_pmc()
    • stringify_note()
    • unexpectedMultipleMatchWarning
    • unexpectedZeroMatchWarning
    • unmatchedCitationWarning
    • unmatchedFigureWarning
    • unmatchedTableWarning
  • scrapemed.scrape module
    • ScrapeMed’s Scrape Module
    • get_xml()
    • get_xmls()
    • search_pmc()
    • validationWarning
    • xml_tree_from_string()
  • scrapemed._clean module
    • ScrapeMed’s Markup Language Cleaning Utilities
    • clean_xml_string()
    • split_text_and_refs()
    • unexpectedTagWarning
  • scrapemed._validate module
    • ScrapeMed’s _validate Module
    • noDTDFoundError
    • validate_xml()
  • scrapemed._text module
    • ScrapeMed’s _text Module
    • TextElement
      • TextElement.get_ref_map()
      • TextElement.set_ref_map()
    • TextFigure
    • TextParagraph
    • TextSection
      • TextSection.get_section_text()
      • TextSection.get_section_text_with_refs()
    • TextTable
    • multipleTitleWarning
    • readHTMLFailure
    • stringify_children()
    • unhandledTextTagWarning
  • scrapemed._morehtml module
    • ScrapeMed’s Custom Markup Language - MoreHTML (MHTML)
    • generate_mhtml_tag()
    • generate_typed_mhtml_tag()
    • remove_mhtml_tags()
    • unescape_except()
  • scrapemed.utils module
    • ScrapeMed’s Utility Module
    • basicBiMap
    • cleanerdoc()
    • reversedBiMapComparisonWarning
  • scrapemed.trees module
    • ScrapeMed’s Trees Module
    • investigate_xml_tree()
    • visualize_element_tree()
  • Module contents